shlomobl
shlomobl
Hi, Has this been solved? I did a fresh install (everything... Ubuntu 20.04, then conda, then nullarbor). I thought nullarbor was working but then I cannot generate a full report....
Hi, First of all thanks for putting all these tools together. I've been using many of them but having everything within a single pipeline is nice! For pangenomes I suggest...
Hi, Thanks for these script! Is it possible to output the clustered genomes as a table? For example: _genome cluster genome1 1 genome2 1 genome3 2 genome4 3_
This is really cool :-) Thank you so much!
Hi again, Is it possible to just plot the heatmap again, without running ANI from start? I am working with about 200 genomes with --annotation on - apparently I need...
Hi, Yes, please, I appreciate it! Especially if results can be summarized in a presence/absence table with all genomes, similar to VFs/AMR. I guess it is easier to generate a...
Hi, Yes, please, I appreciate it! Especially if results can be summarized in a presence/absence table with all genomes, similar to VFs/AMR. I guess it is easier to generate a...
Yes, same organism, paired-end. I actually got a new set of files for these samples (they were re-sequenced) but it would be nice to know how to deal with that...
Hi, Please disregard this issue. I wanted to resume a run by using assemblies but I had a mistake on the metadata file. Solved :-) On Mon, Aug 1, 2022...
Hi, Good news (major release)! I will try with both options you suggested. Thanks! S. On Fri, Jun 17, 2022 at 10:40 AM Narciso Martin Quijada < ***@***.***> wrote: >...