shlomobl

Hi, Has this been solved? I did a fresh install (everything... Ubuntu 20.04, then conda, then nullarbor). I thought nullarbor was working but then I cannot generate a full report....

Hi, First of all thanks for putting all these tools together. I've been using many of them but having everything within a single pipeline is nice! For pangenomes I suggest...

Hi, Thanks for these script! Is it possible to output the clustered genomes as a table? For example: _genome cluster genome1 1 genome2 1 genome3 2 genome4 3_

This is really cool :-) Thank you so much!

Hi again, Is it possible to just plot the heatmap again, without running ANI from start? I am working with about 200 genomes with --annotation on - apparently I need...

Hi, Yes, please, I appreciate it! Especially if results can be summarized in a presence/absence table with all genomes, similar to VFs/AMR. I guess it is easier to generate a...

Hi, Yes, please, I appreciate it! Especially if results can be summarized in a presence/absence table with all genomes, similar to VFs/AMR. I guess it is easier to generate a...

Yes, same organism, paired-end. I actually got a new set of files for these samples (they were re-sequenced) but it would be nice to know how to deal with that...

Hi, Please disregard this issue. I wanted to resume a run by using assemblies but I had a mistake on the metadata file. Solved :-) On Mon, Aug 1, 2022...

Hi, Good news (major release)! I will try with both options you suggested. Thanks! S. On Fri, Jun 17, 2022 at 10:40 AM Narciso Martin Quijada < ***@***.***> wrote: >...