Shireen Elhabian

Test systems data preparation

10

Data are needed to be prepared for all below test systems to evaluate and validate ShapeWorks tools. In house: - [x] left atrium (LA) - [x] left atrium appendage (LAA)...

Subcommand to visualize particles updates given a saved model

8

If the user saved the particle system over iterations, e.g., run on a server, this subcommand/API should provide the user to visualize saved particle updates to trouble shoot correspondence optimization.

Interoperability with 3D Slicer – basic ShapeWorks functionality

2

With Kitware's support. This is the parent issue for interop with 3D Slicer. Goal: To enable a 3D Slicer user to use ShapeWorks tools within 3D Slicer. Objective: Interoperability with...

ShapeWorks coding style guide

2

A document for development coding conventions (e.g. include with " vs

Use case for nonlinear shape variation

4

See [How to Add New Use Cases?](http://sciinstitute.github.io/ShapeWorks/dev/new-use-case.html) for instructions. See also [Getting Started with Documentation](http://sciinstitute.github.io/ShapeWorks/dev/docs.html)

Automated regularization and svd inverse

6

Praful here is for discussion

Python APIs for particles optimization (sampling and correspondence)

8

@AtefehKashani Please define APIs and callbacks needed to perform particle optimization in python for the nonlinear shape model. Adding @cchriste to help Alan and Atefeh getting started with python APIs...

Python API to visualize particles updates given a saved model

3

If the user saved the particle system over iterations, e.g., run on a server, this API should provide the user to visualize saved particle updates to troubleshoot correspondence optimization. Related...

Studio: statistical tests

4

From Amy Lenz: Include statistical analyses in Studio for example: 1) Parallel analysis for containing significant PCA modes of variation. 2) Within these significant modes, PCA loading values compared between...