Jacob Quinn Shenker

Conda package

1

Terrific library, thanks for all the work. It would be great to get a conda package of pygsheets.

Is msgspec suitable for high-performance serialization of binary data?

6

I have a small number of large numpy arrays (1-100MB total) stored in a structured way, with some additional JSON metadata. Something like: ```python { "my_array": numpy.array([0, 1, 2, ...]),...

map_rows with dict return value: `BindingsError: "Could not determine output type"`

5

### Checks - [X] I have checked that this issue has not already been reported. - [X] I have confirmed this bug exists on the [latest version](https://pypi.org/project/polars/) of Polars. ###...

I want to use the python API but be able to input quality scores, either as phred score strings or as a list of uint8 arrays. It would be great...

PSSM support in Python

1

Can you align a PSSM using parasail-python? Thanks!

Occurs in v1.0.17b and master. Here is a MRE I generated with synthetic data. The ground truth segments have only ATs. I generate reads in random orientations spanning the graph...

Allow compilation with latest dependencies from conda-forge

1

Hi, Putting this here in case it helps anyone. When I run `micromamba env create -f CondaEnvironment_linux.yml` (adapted from the compilation instructions, using micromamba instead of conda), I get an...

It would be great if read_bam worked without a BAM index (provided you're not doing a region query). My use case: Oxford Nanopore's Dorado basecaller outputs basecalled reads in BAM...

Oxbow's Python functions (read_bam, etc.) currently return a bytes object. It would be great if they instead returned an iterator of pa.RecordBatch objects instead. The goal here would be to...

I'm not clear on why `Oligo` doesn't inherit from `ListMixin`. This would allow using `Oligo.find_by_name` just as you can with `DNASequence`. Currently I'm using the following monkey-patch, which seems to...