biodiverse
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shawnlaffan
A tool for the spatial analysis of diversity
``` The tree plots currently do not display their labels. It would be useful in some cases to do so, although there will be size issues when there are large...
``` Having such an index would make it easier to compare richness for family, genus and species within a single output. Alternately, we could add a flag to run an...
``` The Site Pair Sampler script works well, but needs a clean up of the internals as well as a refactoring to make it possible to run from a single...
``` It can be useful to attach the results of a spatial analysis of a numeric basedata, for example, as group properties of a related species basedata. Currently this is...
``` The tree plotting and colouring algorithms use a recursive strategy. The issue with this is that large trees will incur deep recursion and any associated overheads. Linearising the algorithm...
``` The MPD and MNTD indices are calculated using a single calc. Often, however, users will only want one or the other. The same goes for the NRI/NTI calcs. There...
Extracted from to do list for #761 but has more general application. Use a def query to speed up analyses. Target basedata might be a very small subset of the...
TreeNode::group_nodes_below is pretty complex for what it does. It might be possible to refactor it using a Schwartzian transform style approach where the bounds and node ref are stored in...
Issue #161 added support for shapefile exports, but it is the entire tree. It would be useful to export grouped level data, as per the table_grouped export. To do: -...
- [ ] Bump versions across all files - [ ] Blog post - https://biodiverse-analysis-software.blogspot.com/2019/09/biodiverse-version-3.html - [ ] Update versions.txt file - [ ] Update news on github.io site (need...