biodiverse
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shawnlaffan
A tool for the spatial analysis of diversity
``` It would be convenient for users to get a list of available arguments and examples for spatial conditions. Currently it just lists valid and invalid args, giving no hints...
``` It's often much easier to fix a user's problems if the program's output log is available. It even includes details about exceptions. Currently I think it's only written to...
The cluster exports currently support the grouped option to delimited text, and the whole table to delimited text. It would also be useful if we could export the tree to...
Now that we have Chao1 and Chao2 through issue #420, we should also add the improved variants from Chiu et al. (2014) http://dx.doi.org/10.1111/biom.12200
``` Most of the Biodiverse modules do not have POD documentation. Those that do are often out of date. This needs to be fixed. ``` Original issue reported on code.google.com...
``` The calculations, e.g. calc_endemism, calc_sorenson, calc_richness, are currently listed under only one category in the calculation lists. In many cases they could easily fall under several categories. For example,...
``` The pntd indices currently consider all labels across both neighbour sets. It would be handy to generalise this to develop a dissimilarity index, where the labels in neighbour set...
``` The system currently checks the validity of the spatial conditions. This makes it easier to debug conditions. However, the checks are imperfect (and actually quite basic). At times it...
``` Matrices with a basedata_ref, such as are generated in Cluster and RegionGrower analyses, should support export to spatial formats. This can involve a to_basestruct method, followed by export of...
``` The help system currently links to a list of available indices, but using a default basedata. It would be useful if the system could generate a version on-the-fly, using...