Shahroze Abbas
Shahroze Abbas
Hello, I am experiencing the issue referenced here #95. I converted a `Seurat` object to `h5Seurat` then to `h5ad`. Feature names are appearing as numbers in the converted `h5ad` when...
Hi, Great to see the classic `WGCNA` implemented for single-cell/spatial datasets. Was wondering if you had any plans to upload to `conda` for package installation. Would make it super easy...
Hello, Love this package for nice single-cell visualizations! I have a bit of a problem. I am working with a large `anndata` object that I am unable to convert to...
Hello, I was wondering if it's possible to use a custom neighborhood graph for metacell construction. Looking through the source code and the tutorials, it seems that the methods depend...
Hello, With the implementation and release of `poissonvi` in the `scvi` toolkit (link to paper [here](https://www.nature.com/articles/s41592-023-02112-6)), I wondered if M3Drop would be applicable for selecting features in scATAC data. I...
Hi, Was just curious if there was a plan to upload to CRAN with the release of Seuratv5? I know these are independent packages, but since Seurat v5 depends on...
Hello, I am attempting to export metadata after running inferCNV. I am able to export the CNV score and the Leiden clusters, however I would like to access everything that...
Hi, Love your package and hope to continue using it! I believe `SCpubr` has support for `Seuratv5` but I was having some trouble with the `do_DimPlot` function. Am I missing...