Shifu Chen
Shifu Chen
is this a common requirement? if yes, it can be implemented.
if your data is paired-end, the adapters will be trimmed, along with the random bases. if your data is single-end, the random bases will be kept. I want to know...
Will be implemented.
use `-o R1.fq.gz -O R2.fq.gz` if you want separated paired files, otherwise use `--stdout > output.fq` to get interleaved output.
it's easy to implement this, but why the paired fastq files get out-of-order?
can you run the new fastp to check whether fastp can detect the adapter correctly?