Setshaba Taukobong

Hi there, I am trying to run medaka using a nextflow script but I keep running into the below issue. Could I please get some assistance on this. Thank you...

error: unequal lengths in sequence and overlap file for sequence 2525deca-ece8-4652-8429-19ca02a0aeca!

1

Hi there, I am getting the following issue after running racon: [racon::Polisher::initialize] loaded target sequences 3.574446 s [racon::Polisher::initialize] loaded sequences 33.367121 s [racon::Overlap::transmute] error: unequal lengths in sequence and overlap...

Good day, I am trying to detect AMRs in wastewater so I would not necessarily have a fasta file considering I'm trying to detect from all species present in the...

Differential methylation scoring

2

Good day, I would like to perform Differential methylation scoring. Is there a way to identify the number of hypo and/or hyper differentially methylated regions in introns, exons, promoters, TSS,...

Zero reads in index error

4

Good day, 
I am trying to detect base modifications but I keep getting a specific error.
I basecalled using the Promethion instrument and got multiple bam files. I then merged...

smudge_pairs: command not found Error

2

Good day, I am trying to run KMC and smudgeplot however I keep getting the below error despite having installed KMC. I am however able to run kms_tools smudge_pairs: command...