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Medaka error
Hi there, I am trying to run medaka using a nextflow script but I keep running into the below issue. Could I please get some assistance on this. Thank you
Error:
ERROR ~ Error executing process > 'POLISHMED (1)'
Caused by:
Process POLISHMED (1)
terminated with an error exit status (1)
Command executed:
medaka_consensus -t 4 -m r1041_e82_400bps_hac_v4.2.0 -i sample_id.trimmed.fastq -d Racon_polished.fasta -o medaka_polished
Command exit status: 1
Command output: TF_CPP_MIN_LOG_LEVEL is set to '3' Checking program versions This is medaka 1.11.1
Command error: TF_CPP_MIN_LOG_LEVEL is set to '3' Checking program versions This is medaka 1.11.1
Work dir: /mnt/lustre/users/pswart/theodorae/work/9f/c1895afbf1c9783084723fbddab494
Tip: when you have fixed the problem you can continue the execution adding the option -resume
to the run command line
-- Check '.nextflow.log' file for details