tephra
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A tool for discovering transposable elements and describing patterns of genome evolution
Hi, I have a bug report and an issue. My data consisted of nine long contigs and many short contigs. At first, I analyzed the whole data, but it didn't...
Dear Evan, I am really excited with getting Tephra running, it seems to be a beautiful piece of software. I had some issues I'd like to solve, though. I am...
Hi, I am triyng to install teprha, the firt step finish succesfully (perl Makefile.PL), but in the second step, I obtain this error: make test make: *** No rule to...
I've downloaded tephra_latest.sif and I'm running it on singularity 3.3.0. When I try a small test I get an immediate error: ``` > tephra all -c tephra_config.test1.yml [ERROR]: 'debug' under...
I fixed the issue of the missing TephraDB files by copying them manually and changing the configuration (Apparently singularity wants the user to be root, but that needs the --fakeroot...
Hello, I run tephra all and obtain an error at the findtirs step: ``` INFO - Command - 'tephra findtirs' started at: 10-08-2019 04:52:59. ERROR - 'gt tirvish' failed exit...
Hello, I don't have `sudo` privileges on our HPC platform, so I could not use the `docker` nor the regular installation method. Instead, I am trying to install `tephra` via...
Hi there, I'm trying to install Tephra on a RHEL-based OS. I've downloaded the lastest version as per your Github instructions and I've installed all the core/per dependencies (I'm using...
Hi Evan, Y ran tephra: ` nohup tephra all -c tephra_config.yml &` since I want al types of TEs. I use a repbase.fasta from Solanum tuberosum for the repeatdb and...
Dear: working with Mac operating system, ``` **echo "n" | cpanm -n Data::Stag DB_File Bio::Root::Version Bio::SearchIO::blastxml Bio::SearchIO::hmmer** Data::Stag is up to date. (0.14) DB_File is up to date. (1.852) Bio::Root::Version...
