Evan Staton
Evan Staton
Any updates? I'd like to help if I can or close the issue of there's nothing to be done. Thanks.
Hi, The exemplar ID will be in the FASTA file also, just `grep` for the ID. grep RLC_family0_exemplar tephra_ltrs_classified.fasta Should tell you the answer. Also, please show a few of...
Hi, Based on the files you show it looks like one or more of the steps failed, or the processes were not complete with you ran other analysis commands? It...
Was this issue resolved? I believe it was in the end, but please let me know if something was left undone so I can update this issue. Thanks.
The exemplar is the representative of the family, and by default the age command will try to calculate the age of only the exemplars for efficiency. However, if you run...
Yes, there are a number of options to the age command, and you can see these by executing `tephra age` command with no arguments like so: $ tephra age [ERROR]:...
> Is the age file with only the examplar age include singletons? No, the exemplars are from multi-copy families, so they do not include singletons. > Are the singletons complete...
> Hi Evan, thanks for the reply > I think I know what was wrong. In the first run the substitution rate was default (1e-8), and in the second one...
Can you share how you installed this? Thanks.
It appears that the program is running out of memory: Failed to allocate 67108864 bytes To confirm, I suggest you downsample the data to a small subset and try again....