Evan Staton

This is good question. I will mark this a request and try make it available from conda as soon as I'm able.

Hi, Currently there are no significance thresholds used, so what is output would be matches up to the default value (e-value of 10.0). If this is of interest I could...

It looks like there might be a problem with the installation. Are you using the Docker image or did you install manually?

Hi @naishikawa, can you share a few of the scaffolds in text file? In particular, the ones that are generating the error. You could email it to me to keep...

Hi Jose, Thank you for the comments and I'm sorry for the slow response. I have been busy with a new job and I was doing a long-distance move last...

The [wiki page](https://github.com/sestaton/tephra/wiki/Specifications-and-example-usage) that is referenced in the configuration file has been updated at least. A thorough demonstration of the usage is still needed but this is a small step.

Hi, I recommend you to run `make clean` and then `perl Makefile.PL` prior to running the `make test`. Let me know what the output of the commands is because it...

This is odd indeed. I have found that line endings can sometimes get messed up when editing these files and it is hard to fix, but starting over is usually...

This is what I get when I do the same: tephra all -c tephra_config.yml [ERROR]: genome file was not defined in configuration or does not exist. Check input. Exiting. Can...

That is the previous version. The latest is v0.12.5, so that is the issue. Let me make sure the latest version was pushed to Singularity Hub because that would be...