Transposome
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A toolkit for annotation of transposable element families from unassembled sequence reads
Hello - I am having an issue with installing transposome, and it appears to be related to the blast and unionfinder modules, however these are installed appropriately on my system....
Hi! While I run Transposome, and I got the following error: INFO - ======== Transposome version: 0.12.1 (started at: 13-09-2021 09:46:13) ======== INFO - Configuration - Log file for monitoring...
Hi Evan, I have started to run Transposome and I have the following error ``` INFO - ======== Transposome version: 0.12.1 (started at: 16-07-2020 12:13:32) ======== INFO - Configuration -...
Hi, I run the Transposome and it seems I met the problem in "convert" part: > Louvain 'convert' failed. Caught error: "/home/wangjy/perl5/bin/louvain_convert -i . -o maize_transposome_results_out_100k_8-21/.bin -w maize_transposome_results_out_100k_8-21/.tree.weights" died to...
Hi, @cmonjeau and me are trying to make a bioconda recipe for transposome, but we are stuck on a strange dependency on formatdb and mgblast. It looks like at some...
The singleton repeat fraction is derived from annotations but this is not clear from the summary file. This could be presented better, and maybe provide a link to the wiki...
...also show memory usage as a function of genome coverage.
Hi, can I use Transposome for annotating transposable elements from paired-end metagenomics data of complex microbial communities? If so, what would be the repeat_database in the config file? Thanks!
