Sergii Gladchuk

icon company Lund University Cancer Center icon location Lund, Sweden icon location Cancer Genomics reasercher at @translational-oncogenomics (http://www.med.lu.se/saalgroup).

Results 3 issues of Sergii Gladchuk

pymysql versioning check does not work for versions above 0.10.*

**Describe the bug** Current logic to check version of pymysql throws assertion error for newer version 0.10.* and above **To Reproduce** Steps to reproduce the behavior: 1. Install newest version...

'Index out of range' does not point to exact annotation

4 comment

vcfanno version 0.2.3 [built with go1.8] In case of having wrong column index in [[annotation]] like: ``` [[annotation]] file="data/radar/radar_hg38_v2_sorted.bed.gz" columns=[5] names=["radar"] ops=["uniq"] ``` ,where 5 is more than I have...

Old suffix_tree dependance

Hi. I perform analysis of big set of RNA-seq data from cancers, and wanted to check out this IG repertoar direction as well. I usually run all analysis in snakemake...