Sergey Mitrofanov

Hello. Any news here?

Can we hope to see this update soon?

Same question here! Could you provide, please, an instruction for updating the HLA database in the xHLA using the latest one from https://www.ebi.ac.uk/ipd/imgt/hla/ ?

Hi. Any news?

This is important to me too. Is it possible to fix it?

@sfchen, yes, of cause!

I am interested in it, but I think I can only test it.. I don't feel myself free enough in python..

I think, that it would be perfect I user can specify some prefix for reports, e.g. `--report-prefix=/path/to/dir/filename` and then: ``` /path/to/dir/ ├── filename.html └── filename.json ```

There is one more "issue" or bag with this in v0.9.0: If I run `after.py --read1_file=SRR3184279_1.fastq.gz --read2_file=SRR3184279_2.fastq.gz --read1_flag=_1 --read2_flag=_2 --qc_only` then I get everything ok: ``` $(pwd)/QC/ └── SRR3184279_1.fastq.gz ├──...

Now previous behavior is changed to more predictable:) Thank you! But I still think about the variant when we specify `-1` and `-2` options: is this mode we have only...