Sarah Djebali

icon indicating a website link https://www.irsd.fr/sarah-djebali.html icon indicating an email [email protected]

icon company INSERM icon location Toulouse, France icon location Initially trained as a computer scientist, I did my phD on gene finding (Exogean), and then participated to many functional annotation consortia (ENCODE, FAANG)

Results 4 issues of Sarah Djebali

NGMLR very slow on bovine nanopore reads

2 comment

Dear all, First of all, thanks for this very nice development. I just wanted to report the fact that on some quite heavy ONT runs from bovine, NGMLR followed by...

3 questions about code usage (white list and bioreplicates)

1 comment

Dear all, Thanks for the nice method and associated code. This is not really an issue but some general questions about the usage of the code. 1) can the white...

core dump when removing duplicates

2 comment

Hi, I am trying to run Bayesembler on a tophat2 (2.0.8) generated file from human K562 whole cell polya+ RNAseq (dUTP protocol): https://www.encodeproject.org/files/ENCFF412EYU/@@download/ENCFF412EYU.bam Here is the command I ran on...

bowtie_indices not working with downloaded mature and hairpin fa.gz file

4 comment

When using the dev branch code of Dec 10th 2020 with `--fasta sus_scrofa_11.1.fa --mirtrace_species ssc` bowtie_indices process fails with `gzip: mature.fa.gz: Too many levels of symbolic links` I will take...