Stephen Watts
Stephen Watts
I haven't been able to replicate the bottleneck as I understand from your description. For some additional context, each MarkDups task must receive all BAMs for a given sample before...
Closing the issue but please re-open if you'd like to discuss further!
Hi @SPPearce thanks for opening the issue. We'll have support for this functionality in an official nf-core release soon - stay tuned!
We are trialing custom panel support in the 0.5.0, and I've put together some general high-level documentation on customising resource files that translates to panel data as well [here](https://nf-co.re/oncoanalyser/dev/docs/usage/#customising-hmf-data). You...
No worries! And I totally agree with your suggestion - we've previously discussed plans for implementing a similar feature that you've described.
Thanks for creating opening this @FriederikeHanssen! I've made some edits above to give some more context for when we return to the issue
This unfortunately requires changes in the upstream WiGiTS tools to be feasible
Hi @bounlu, I've been away on leave so didn't have the chance to look at this earlier. Thanks for the description of the problem - it looks to directly related...
I'll close this issue for now - please reopen if you have any updates!
I think we are limited here to making use of the Content-Length or Transfer-Encoding header fields. Just reading through RFC 9110 and I see that the spec stipulates a server...