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Simple comparative benchmarks
We should have a simple comparative benchmark (with prose) comparing using AnnData and our on disk format to alternative structures.
Initial measurements could look at:
- IO time
- IO memory
- On disk size
- In memory size
Alternatives to compare against include:
- Serialized R object (SeuratObject, maybe also SingleCellExperiment)
- Loom
Variables to consider here include file format (hdf5 vs zarr), chunking, and compression.
Good resources to use here include: