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Published 20 hours ago • verified publisher icon scverse

suddenly unable to read .h5ad file

Open parkjooyoung99 opened this issue 2 years ago • 2 comments

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there were no problem reading .h5ad file but all of the sudden, this error came up and unable to read .h5ad files,,

someone have any idea??

Thank you!!

parkjooyoung99 avatar Jun 07 '22 06:06 parkjooyoung99

It was probably written by a newer anndata version. Try updating anndata, maybe that helps.

We have a PR that improves error messages in this regard. @ivirshup could you please merge or adapt and then merge #734?

flying-sheep avatar Jun 07 '22 08:06 flying-sheep

Thanks for your help! I have updated anndata and h5py and re-start my jupyter noteobok and it works!!

parkjooyoung99 avatar Jun 08 '22 01:06 parkjooyoung99