Simone Coughlan

Results 4 comments of Simone Coughlan

We have also encountered this bug when trying to use it with GATK.GRCh37 and sarek v3.1.2. Approx 128 GB https://github.com/bwa-mem2/bwa-mem2/issues/41#issuecomment-581684706 is recommended for human genomes. Changing the process label of...

> Here are some docs on how to increase resources for specific process without touching the code base: https://nf-co.re/docs/usage/configuration#tuning-workflow-resources Thanks for the docs. I am aware of how to do...

I am also having the same error. I worked around it by downloading and unpacking the jaffal reference outside of the pipeline with the code below ``` curl -L https://ndownloader.figshare.com/files/28168755...

I also just tested with `nextflow run nf-core/circrna -profile test_full,docker --outdir ./test_full` and get a similar error so my previous assumption about the cause was wrong. ``` Submitted process >...