Test profiles failures

[scoughlan2]

Description of the bug

I tried to run the test profile with nextflow run nf-core/circrna -profile test,docker --outdir ./test but get the error below. As both the test and test_full profiles use the same samples, I'm guessing this is because only circexplorer2 is run in the minimal test compared with the multiple bsj detection tools that are specified in conf/full.conf .

Error: Submitted process > NFCORE_CIRCRNA:CIRCRNA:BSJ_DETECTION:FAIL_ON_EMPTY (empty) ERROR ~ No circular RNAs were found by any tool in any sample. Feel free to check the preliminary results in 'test' You can enable saving intermediate files by setting the parameter 'save_intermediates' to 'true'.

Command used and terminal output

nextflow run nf-core/circrna -profile test,docker --outdir ./test

Relevant files

No response

System information

• nextflow version 23.10.0
• container engine: docker
• nf-core/circrna dev branch on 10Sept2024

[scoughlan2]

I also just tested with nextflow run nf-core/circrna -profile test_full,docker --outdir ./test_full and get a similar error so my previous assumption about the cause was wrong.

Submitted process > NFCORE_CIRCRNA:CIRCRNA:BSJ_DETECTION:FAIL_ON_EMPTY (empty)
ERROR ~ No circular RNAs were found by at least 2 tools in any sample.
Feel free to check the preliminary results in 'test_full'

[nictru]

Hey, I think this should be fixed by now, if not feel free to reopen!