Mark Schultz comments

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                                            Mark Schultz

Issue after conda install: Can't locate Bio/Root/Version.pm in @INC (you may need to install the Bio::Root::Version module)

Hi @c-leber , You will need to install the missing perl modules, in this case `Bio`. Try something like `cpanm install Bio::Root::Version`. If you get a new error message on...

snippy multi prompting unreadable file

@tseemann I think this issue can be closed now.

Extract the genes with variants

Hi @SolayMane , Please use `bedtools` to extract the genes that are affected. You can get the names of the genes that are affected from the `snps.tab` file, you can...

Erroneous Environments Showing up in Conda Nb tab with error

None of this worked for me as my issue was slightly different, but I found the removed environment that was being returned in the error was stored in the environment...

Hi

I think this is because you are writing out to the file you are reading from. Recreate your input files and rename your final output files.

Retrieve paired-end reads with their mates

Yes. Run it twice. First time, use R1, second time use R2. On each run, use exactly the same seed value. This use case is given as an example in...

Warning: [blastn] Examining 5 or more matches is recommended

thanks for fixing

Background color of tabs in left side or right side configuration should match the theme

I have found when you click on settings > window > and change the dropdown, it seems to fit closer to the chosen color scheme

PHYLIP output?

Will be GREAT to pass to quicktree. Thanks!

[HACK TOPIC] Process unit testing

There's also this: https://github.com/LUMC/pytest-workflow