tseemann
Warning: [blastn] Examining 5 or more matches is recommended
New BLAST 2.8.1+ prints the above warning. This happens when the user database has less than 5 sequences in it.
In BLASt 2.9.0, this error is still triggered, causing an exit. Are there plans to fix this?
I have the same error with Blast 2.9.0. This leads to the stop of my jobs. Should we use an older version of Blast?
@marieBvr @vinisalazar @KarenRossmassler sorry i did not see these issues as the issue was closed. does it still occur with BLAST 2.10 or in abricate 1.0.1 ? can you open a new issue if it is still happening please and i will investigate.
@tseemann I have not had a chance to launch a BLASTN in a while. But I also got the blastx warning. That doesn't stop my job, but the warning is raised for every job I launch. Do you still want me to open a new issue even if it does not stop the job anymore ?
I am getting this error in blastn 2.9.0+ yet my fasta file has 1388 sequences in in (in this case just contigs of a genomes).
any updates? I got 1 warning and 1 error:
Warning: [blastp] Examining 5 or more matches is recommended BLAST Database error: Error pre-fetching sequence data
$ blastp -version blastp: 2.9.0+
$ prokka -v prokka 1.14.6
thanks a lot any updates? I got 1 warning and 1 error:
Warning: [blastn] Examining 5 or more matches is recommended
ncbi-blast-2.13.0+
I deleted the file from the beginning and followed the steps in the video. And my problem is solved.
Hi, Can I ask you witch file you deleted and which video you watched? I keep getting this warning even in the BLAST v 2.13 and my fasta file has more than 100k sequences. And it does causes exit.
