schmittel

Hi, I'm currently attempting to search a multifasta file against itself using `mmseqs search`. The file contains 10432883 sequences so naturally it's going to take a long time. I stopped...

ERROR: Please install the 'stats' program

1

I'm having a similar issue to [https://github.com/slowkow/picardmetrics/issues/6](url) . When I run picardmetrics I get: `2020-11-18 08:16:00 picardmetrics config: '/cd16/software/picardmetrics/picardmetrics.conf' ERROR: Please install the 'stats' program https://github.com/arq5x/filo` The output of `which...

.dbtype already exists error when clustering using profiles

1

Hi, I'm having difficulty clustering using profiles when following the instructions in the wiki. Specifically I'm referring to this section: ``` # extract consensus sequences from profiles mmseqs profile2consensus profileDB1...

Bacterial GTDB-Tk classification file does not exist error when using gtdb_to_ncbi_majority_vote.py

1

Hi, I'm having the aforementioned issue. Here's the output I'm getting from `gtdb_to_ncbi_majority_vote.py`, including the parameters I used: ``` gtdb_to_ncbi_majority_vote.py v0.2.0: Translate GTDB to NCBI classification via majority vote. by...