schmittel

I'm having the same issue... Was there a solution identified?

Oh I figured it out. Needs the histogram.py script - didn't see that one. And the paths need to be matched with the *.sh script.

Same here. I ran Circlator on a PacBio assembly and it took about 2 hours to complete. Ran it again on another sample (of the same genome, same size/depth) and...

I just learned that `mmseqs cluster` and `mmseqs clust` were different things, which solved the issue. Apologies for the confusion.