Chaim Schramm
Chaim Schramm
In version 2.2.0 of the R package, the parameter `save.model.plots` to `knn.error.models` is unused and instead it saves plots only `if (length(vic) < length(ids)) {`. In R/functions.R (line 1264) this...
I'm trying to use bracer with a custom gene database (which is actually a superset of the standard IMGT database). After the documentation issues in #31, I did include a...
The documentation for `build` indicates that `D_seqs` is an optional argument. However, if it is omitted, `bracer assemble` submits an invalid command to IgBlast that causes a crash: ``` Traceback...
1. The arg parser doesn't accept the `--help` option 1. Run-time compile is turned on by default, forcing use of the developer option `-p` 1. There is no way to...
``` $ sircel --barcodes C4ML7-merged.fastq.gz --reads C4ML7-merged.fastq.gz --output_dir sircel --threads 16 --barcode_start 0 --barcode_end 16 --umi_start 16 --umi_end 26 Inspecting and pre-processing inputs Unzipping (temporary) Splitting reads by barcodes Building...
Something is getting corrupted when Checkout is compressing its output. This is causing Histogram to give an `invalid block type` error. I've pasted the trace from Histogram below, but the...
Replaces #748 Closes #578 So far: just some docs updates...
Draft of updates to `Clone`. Closes: #201 (incidentally) #317 #333 #378 #769 Open questions, both related to the switch from `Repertoire` to `RepertoireGroup`: - [x] Do we need a more...
Dunno if anyone is actually using it, but seems like we might want to have all of the schemas be "stable" for post-2.0 stasis