Salvador Capella
Salvador Capella
I just proposed to create an empty file in case the "acc2exclude.txt" file is missing.
When having incrementally constant gaps score, study the behaviour for gappyout.
It might be worth adding a flag to ignore warnings rather than stopping trimAl execution
I have detected an unexpected behaviour when trimming an alignment based on consistency methods, which compute their scores based on the level of agreement across a set of input alignment....
Improve "-colnumbering" parameter by providing more information about which columns from the old alignment corresponds to the new one.
When providing stats, for instance, similarity values or gapp values. It would be good to have the average value for the whole alignment
Different genetic codes: Universal, mammalian mt, yeast mt, mold mt, invertebrate mt, cilate nuclear, echinoderm mt, euplotid mt, alternative yeast nuclear, ascidian mt. When it comes to labeling stop codons,...
Check whether it is already fixed to consider lower and upper case letter the same symbol.
The documentation needs to be intensively extended to incorporate the latest improvements. It is also lacking enough clarity about how to use specific functions.