webknossos-libs
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Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
### Description: - Try to cancel the submitted cluster jobs when receiving the SIGINT signal so if the user decided to abort the execution - Also don't interfere with the...
### Description: rewrites the detect_interval_for_dimensions function to use a regex and os.walk instead of glob and str.index, making it much more robust and improving performance by cutting a lot of...
Bumps [certifi](https://github.com/certifi/python-certifi) from 2021.10.8 to 2022.12.7. Commits 9e9e840 2022.12.07 b81bdb2 2022.09.24 939a28f 2022.09.14 aca828a 2022.06.15.2 de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ... b8eb5e9 2022.06.15.1...
Bumps [certifi](https://github.com/certifi/python-certifi) from 2021.10.8 to 2022.12.7. Commits 9e9e840 2022.12.07 b81bdb2 2022.09.24 939a28f 2022.09.14 aca828a 2022.06.15.2 de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ... b8eb5e9 2022.06.15.1...
## Detailed Description - Affected library: webknossos webKnossos now supports dataset management in the form of folders. It would be great to be able to assign folders using the `RemoteDataset`...
## Detailed Description - Affected library: webknossos `Dataset.from_images()` and `ds.add_layer_from_images()` do not support zarr datasets yet and maybe (see below) should. It should be possible to simply copy or link...
### Description: - abc ### Issues: - fixes #... ### Todos: Make sure to delete unnecessary points or to check all before merging: - [ ] Updated Changelog - [...
Looks like Python 3.9 does not yet work with `wkcuber`. https://github.com/scalableminds/webknossos-cuber/runs/1571097340?check_suite_focus=true
## Detailed Description Since `Dataset.from` images is now capable of most standard wkcuber features (after #820) and has some improvements, we should use it in the wkcuber CLI (might also...
Bumps [pillow](https://github.com/python-pillow/Pillow) from 9.1.0 to 9.3.0. Release notes Sourced from pillow's releases. 9.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/9.3.0.html Changes Initialize libtiff buffer when saving #6699 [@radarhere] Limit SAMPLESPERPIXEL to avoid runtime DOS #6700 [@wiredfool]...