Sébastien Besson

Results 117 comments of Sébastien Besson

> OK to update that behaviour for Multiscales to use current version as default? At lest from my side, yes. I assume that's the spirit of the comment in https://github.com/ome/ome-zarr-py/blob/6c24f139b7f24a8d2d9b98a53d73b9e1353f0576/ome_zarr/reader.py#L284...

HI @aliaksei-chareshneu, the README contains some usage instructions but we started the discussion in https://github.com/ome/ome-zarr-py/pull/121 around generating some readthedocs documentation. It would be useful to know what would be useful...

@BioinfoTongLI at the moment the XML file in `[zarr_root]/OME/METADATA.ome.xml` is specific to the implementation of https://github.com/glencoesoftware/bioformats2raw and is primarily driven by compatibility with the follow-up `raw2ometiff` component of the pipeline....

> Do we call this 0.6.0rc1, or should we just go for 0.6.0 release? No strong preference either way from my side. I just feel we need some form of...

Hi @sebi06 ``` and from the docu it says the image array must have 5 dimenisons in the following order TCZYX. ``` Can you point us at the location which...

Thanks for starting the discussion. I think https://github.com/ome/ome-zarr-py/issues/225#issuecomment-1243286934 does a good job of enumerating the main use cases. Adding a few other variants to the list: > Combination of imaging...

> I would argue that acquisition metadata should be used for images that can be placed in the same coordinate system. As it is defined in the current OME-NGFF specification,...

> So we could say that acquisition = run of the microscope, right? => According to that definition, if we have multi-FOV wells, they should all belong to the same...

> In that case, acquisition = run of the microscope is correct. But how people run their microscope can vary greatly... Agreed and based upon OME's experience of dealing with...

Thanks for the feedback @LucaMarconato, I wonder whether you are encountering the same issue that was attempted to be fixed in https://github.com/ome/ome-zarr-py/pull/197. As this branch is currently conflicting with the...