Sébastien Besson

For OMERO.fs, I don't think it's an import https://github.com/ome/openmicroscopy/blob/8398c91cfbb1f0e7a0ac1be24898132799639e3c/components/tools/OmeroFS/test/drivers.py#L232 For the CLI tag test, I left the import as the `input` method is monkeypatched as part of the test https://github.com/ome/openmicroscopy/blob/8398c91cfbb1f0e7a0ac1be24898132799639e3c/components/tools/OmeroPy/test/integration/clitest/test_tag.py#L134

Which use case are we trying to solve here? To the best of my knowledge of the GitHub workflows are executing the tests so I am not even sure the...

Thanks @jburel, the `UNKNOWN` is likely related to the tag not being pulled. Independently of this, I have certainly seen similar errors recently with modern Python versions. I think one...

Thanks both, that is really useful and seems to confirm that `zarr-python` can read the chunks generated by `zarr-java`. > loaded the image but I see the omero metadata (channel...

Thanks @melissalinkert, I regenerated the Zarr files using the latest build from this PR and the following scripts ``` PATH=./bioformats2raw-0.12.0-SNAPSHOT/bin:$PATH mkdir -p default rm -rf default/* time bioformats2raw sources/Leica-1.scn default/Leica-1.ome.zarr...

Thanks Norman. Thinking of this it in terms of JSON schema, this means the `ome` key should behave the same as other keys defined in this specification and allow any...

@dependabot merge

@dependabot rebase

Bio-Formats currently depends on two separate libraries for handling HDF5 based file formats: - NetCDF Java (currently `edu.ucar:cdm-core:5.3.3`) is the historical library and is used by ImarisHDFReader, MINCReader and VeecoReader...

@pepone from a maintenance perspective, we are aware that Ice will need to be upgraded at some stage. From previous experiences, we are arguably talking of the most challenging OMERO...