Sébastien Besson

For testing definitely, but the same set of decisions will apply to #638 where we the plates have not been converted yet so I wanted to make sure we have...

Incidentally, I came across this conversion as part of a separate body of work. With the help of @melissalinkert, a workaround was found to inject additional plate metadata, let this...

For reference, this is the script that was used for symlinking the source TIFFs and renaming them according to the pattern expected by the reader ```python import os import re...

Yes converting and updating the checklist as a new dataset is uploaded to the bucket

On `idr-ftp` downloaded the plates from the S3 bucket and zipped them in place with `for i in $(ls .); do zip -rm $i.zip $i; done`: ``` (base) [sbesson@idrftp-ftp idr0033]$...

If PubMed ID is supplied, I would minimally update the parser to ensure the metadata is consistent with the PubMed API. Unclear about dispensing it though especially as most studies...

Extensively discussed the relationship between study and authors this morning with @jburel @jrswedlow @francesw @dominikl @pwalczysko and @will-moore . Below is a summary of the current IDR model: - each...

At least from the OMERO perspective, the individual fields of view would not classify under the category of large images (aka larger than 3K x 3K) where the server would...

:+1: for reducing the example duplication. A few questions comparing https://github.com/IDR/idr-notebooks/blob/c79cef6e328581480b8d3ef6e4e621a4d6b471f4/CalculateSharpness.ipynb and https://github.com/ome/omero-guide-python/blob/master/notebooks/CalculateSharpnessOneImage.ipynb: - the guide notebook points to `workshop` by default which means it is not executable without a...

Trying to compare to various expectations from published similar workflows incl. https://workflowhub.eu/workflows/195, https://workflowhub.eu/workflows/120: - overall, assuming the publication is straightforward, it effectively gives a landing page and potentially improves the...