Sue Bello
The MP also has a branch for normal phenotype (MP:0002873) which has the direct children "no abnormal phenotype detected" (http://purl.obolibrary.org/obo/MP_0002169) and "phenotypic reversion" "no abnormal phenotype detected" is what we...
The MP terms that I created recently have the definition format 'any anomaly in the position of X in relation to other structures' Some of the ones Cindy entered use...
Another example alopecia (http://purl.obolibrary.org/obo/MP_0000414) and Hypotrichosis (HPO) (http://purl.obolibrary.org/obo/HP_0001006) both use the same eq has part some ( decreased amount and inheres in some strand of hair and has modifier some...
Note there is an old ticket related to this issue https://github.com/obophenotype/upheno/issues/110 which was in favor of option 3 (lacking processual parts). I would agree that the definition of lacking processual...
Some examples from the MP that may help with this pattern(s): The MP has a bunch of these terms but we have split them into abnormal physiological response and abnormal...
We're going to want either the first or second option as the entity is often smaller/more specific than an entire organ.
MP has abnormal sleep behavior (http://www.informatics.jax.org/vocab/mp_ontology/MP:0011396) This has children like: fragmentation of sleep/wake states (MP:0009436) abnormal circadian sleep/wake cycle (MP:0020478) narcolepsy (MP:0020478) abnormal sleep pattern (MP:0001501) There are a number...
MP has terms for abnormal/increased/decreased grooming and looking at the annotations I see notes like male mice exhibit more bouts of grooming and longer time grooming in a splash test...
This came up in https://github.com/obophenotype/upheno/issues/327 as well. Yes, the desire is to split level of chemical from amount of physical entity (cells, tissues). We can either repurpose the non-specific level...
I thin we can close this, terms have been added to MP in ticket https://github.com/mgijax/mammalian-phenotype-ontology/issues/3637