Satrajit Ghosh

Results 251 comments of Satrajit Ghosh

@PeerHerholz - while nilearn can plot surfaces, i'm not sure it can plot the shape features. hence it may limit what you can do. in addition to niwidgets, you may...

@jrasero - the last column is set as the constant vector (corresponding to k=0) right after the for loop, so i believe that function is doing what it is supposed...

@burdinskid13 just ran into this causing an upstream mismatch with the source dataset. it would be nice if fmriprep produced the same naming convention as the original run.

the basic question is what are the memory requirements of that function.

@brianthelion - actually we just want to know what the memory requirements are. for example for a standard brain mesh size of about 2 hemi x (100k vertices + 100k...

@brianthelion - i'll try to get more specifics this weekend.

yes and no. i can replicate the error when i run it on it's own, but not when i'm memory profiling it. i have limited it to the zernicke function....

pong! sorry i have had no time to test this issue. unfortunately this will require me to carve out an hour or two and those have been a little scarce!...

ok - so here is the issue: https://github.com/binarybottle/mindboggle/blob/master/mindboggle/shapes/zernike/pipelines.py#L232 multiprocessing doesn't use shared memory and makes copies of every data bit that's passed through `map_async` which is used in the line...

@brianthelion - it's actually the same pattern that's used throughout that file. i just used one example to highlight it.