sarahhp

I was very excited coming across this answer, but when I tried running a both a PE and SE read file in paired-end mode (-f BAMPE) I noticed all the...

I've been getting the same issue on a dataset of 40k cells and 75k features, with counts ect. stored in file using BPCells. My workaround was to subset the Seurat...

I'm getting the same dpsi.temp.0 output file instead of the the final .dpsi file for a two condition comparison with 5 paired replicates. All the events seem to be in...

Just tried with the classical method and I get the same error as reported in #126 : 

I do have many NAs, I assumed the default nan threshold of 0 would remove those from calculation?

I'm using the conda version. The -nan error only occurs when using the --method classical.

Okay yes, I just tried using the github code and this fixes the -nan error. Now with --method classical it also creates the temporary output file with the suffix dpsi.temp.0....

Sure ! test_dataset.zip suppa.py diffSplice -m empirical -gc -i all.gencode.v32.events.ioe -p white_v_beige/white_events.psi white_v_beige/beige_events.psi -e white_v_beige/white_iso.tpm white_v_beige/beige_iso.tpm -o white_v_beige/four_donor_diffSplice On Sat, Aug 19, 2023 at 3:34 PM Eduardo Eyras ***@***.***> wrote:...