Abhijit Sanyal

Hi Chris, I want to use the Braker2 container you built from singularity hub. Two questions I had (I am just getting my hands dirty with singularity). Do you pull...

Hello Lin, I am aware that MitoZ is designed for animal mitogenomes. I am asking whether it has the capability of working on plant mitochondria as well. Do you see...

Hi Lin, Thank you for the reply. Lets say for ncRNA and tRNA I use a seperate tool like infernal and tRNAscan-SE. For protein-coding gene prediction do you forsee any...

Thanks Jacques. The problem with the GTF2hints scripts is that there are several of them, and one has to tie them together using another join script in the Augustus scripts...

Hi Jacques, I was wondering if this request can still be worked upon. Regards Abhijit

Hello, I get the following warning on running liftoff. I think the tool works fine.... I have not checked the output thoroughly. However, just wanted to float this and reach...

Writing to find out if there is a way to convert a HISAT2 alignment to a TopHat2 alignment. Cuz then the problem will be solved.

Hello, I have not tried running the linux version. Does it have the same issue? Has anyone tried? -Abhijit On Tue, Apr 7, 2020 at 1:29 PM au1510 wrote: >...

Hello All, Please find attached a screenshot of the latest version of Easyfig 2.2.5 run on Windows 10. I installed the latest version of blast+ 2.10 on the windows machine....

You can try the tool ACT. That will generate the comparison files. Conversely try an earlier version of easyfig for windows version 2.2.2. This works perfectly. -Abhijit On Mon, Aug...