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Pipelines for the production of Treeval data

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Add as we come across them: tidk alans script alans script, expanded to larger section of genomic sequence university group

Release 2

Local testing for small and large and data set. Standard command: ``` bsub -Is -tty -e error -o out -n 2 -q oversubscribed -M4000 -R'select[mem>4000] rusage[mem=4000] span[hosts=1]' 'nextflow run main.nf...

documentation

### Description of feature Load hard-coded parameters for tools from central location.

enhancement
Release Limbo

Work with James to get the output of decon as a viewable track. Output is bed, some work on James' end to get it into a format required for display....

enhancement
Release Limbo