samkleeman1

Funannotate update error

1

Hi, I was running the following command having completed training steps as per tutorial https://funannotate.readthedocs.io/en/latest/tutorials.html#genome-assembly-and-rna-seq: `funannotate update -i BALBie_ragtag_train --cpus 40` I then received the following output: ``` [Dec 21...

Error in Diamond step

3

Hi, Many thanks for making this package available! I had an error as part of the funannotate predict step - it appears to be one that is mentioned in a...

Access to predictions

1

Hi is there a way you can share the predictions from this model, git lfs is saying you are over your quota. Very grateful for your help with this. Kind...

Data augmentation

1

Thanks for much for your work in preparing this repository, it is an incredibly helpful resource. I was wondering whether you (or anyone reading) has experience combining this workflow with...

1000 Genomes related SV calls

2

Hi, Many thanks for making all code and data available. I am very keen to access this file (https://cgl.gi.ucsc.edu/data/giraffe/products/vggiraffe-sv-relkgp-raw.vcf.gz) reflecting the SV calls from the related subjects in 1000 Genomes....

Hi, I am wondering if there is any way to generate phylogenetic trees using amino acid alignment data (cf. DNA alignment data). I.e. with the TREE command. BW, Sam Kleeman.