pypath
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saezlab
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
# Summary Here I have a suggestion to make. After thinking a while about Disgenet API, I've come to a conclusion. Using classes for authorization required APIs is the best...
**Describe the bug** I can't send authorizaton or any kind of headers to websites with curl module in pypath if the headers are defined as dictionary. **To Reproduce** Steps to...
**Describe the bug** I'm getting circular import issues from other parts of the pypath while developing ```disgenet.py```. I installed it in three different ways but I'm getting an error about...
Hi, I can not reach some of the modules in the "inputs" module. The ones I can use are shown below. Is there another way to use the other ones?...
**Describe the question** Can we reach all the identifier type list to use as source or target id? For example, can we translate drug ids with their alternatives? Can we...
Hi Denes, We are working on adding new databases in pypath. We have completed one of them, Drugcentral. How would you like to proceed about merging new scripts or updates...
**Describe the bug** We were trying to convert a network object into dataframe. We are following github pypath_tutorial.ipynb tutorial. In section 19, we couldn't import main, data_formats, network modules. In...
Add 4 new columns to the output of the interactions query: evidences (resource:reference tuples) for 1) undirected, 2) directed, 3) activation, 4) inhibition. This is required for a better interoperability...
Would be useful to have an attribute for each of the original resources (or evidences within them) showing the type of the evidence behind the database records: literature curated, high-throughput...