CARNIVAL

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Carnival usage error

2

Hi, I am using CARNIVAL with RNAseq data (4 conditions with 3 biological replica). It went well with DoRothEA and PROGENy for data prep, but I am having some issues...

rengulA

How to use CARNIVAL to fit multiple conditions data

1

Hello, I am interest in running CARNIVAL on multiple conditions data. I have found a branch in which this aspect was investigated, however unsure whether is the most suitable way...

olapuentesantana

 optimal function value - size penalty = goodness of fit

ivanovaos

Saving results step is very slow

1

when great amount of solutions are generated and/or solution tree is very large Solution: Review the code part that does it and find optimisations Reported by Aurelien

ivanovaos

Missining complete tutorial

6

Hi, I'd like to use this software for my research. Although I I can't find a complete tutorial or an example (including Dorothea and Progeny) through which I can understand...

michelegentili93

So there is no need to rerun from scratch

ivanovaos

adugourd

Feature Request: Omnipath network from original paper

2

Can the omnipath network used in the original paper be provided as part of the repo? Is it already publically available?

josiahbjorgaard