Muhammad Saad Shamim

AWK bug rounding in script

2

On certain systems (e.g. Google Colab), awk will round the values of longs / use scientific notation. This results in the index_by_chr script returning an unusable file.

PLEASE POST QUESTIONS TO THE FORUM; GITHUB ISSUES FOR BUGS ONLY

1

General announcement - Please use our forum, [aidenlab.org/forum.html](aidenlab.org/forum.html) for asking questions about juicer, including anything related to installation, running the software, interpreting warnings/errors, or general questions related to 3D genomics....

Binsizes dictionary should be deprecated/replaced.

Hotkeys

2

Should be a list somewhere of all the hotkeys

pre requires sorted input

1

https://groups.google.com/forum/?utm_medium=email&utm_source=footer#!msg/3d-genomics/h14qevPLUso/NZXWngZrBwAJ

right click on 1d annotation track and an option should appear to scale to it. including for bed files (i.e. 0 no signal, 1 where bed file has signal; bedgraph/wig...

< 10 bp removal fix

https://github.com/aidenlab/Juicebox/commit/4efe52a2ae527c80bb50b3dee72116d2e3bfbdee