Sara Aibar

Dear @hernandezvargash , It seems you are using the very last version of RcisTarget and AUCell (just published on Nov 2). I have not updated SCENIC to work with those...

Dear @lagom2728 Can you indicate which other users are having this same issue? (maybe #227 ? ) I cannot reproduce the error myself...

[ Similar to issue #93 ] Dear @lucyu2668 , Most of the issues when loading SCENIC are related to loading the databases: a) Due to incomplete downloads b) Due to...

Hello, Sorry, that was a bug that was introduced in one of the releases from AUCell. It should now be corrected, but you might still have that version. To solve...

Hello, `indexCol` was added to RcisTarget in the last Bioconductor update. To avoid the error you have to keep consistent versions, i.e. : - Option A (recommended): Install the latest...

Hello @Hardy62442 @yixugalaxy @hk106609620 @BIOBRICK , Sorry! The error was due to a typo in the function in SCENIC! I think it should now be solved. Please, re-install the package,...

Probably because you have not updated the path properly (i.e. taking into account in which directory you are running it)...?

Dear @shexiaolu, It is difficult to help you with the error without having access to the data itself, nor an example of reproducible code... The easiest would be that you...

Dear @or-lazarescu : In your code, the database names " hg19-500bp-upstream-7species.mc9nr.feather" include an extra space at the beginning. That could be the reason for them not to be found. Could...

Hello, In order to check what might be going on we would need some more information. Ideally, an example to reproduce the error. Please, also mention which AUCell version you...