ryao-mdanderson

Compile error for multi-threading mode

8

Hello Delly author: When I tried to compile multi-threading mode on our HPC cluster, RHEL 7.9, I see these output and hit the errors: we use gcc/9.3.0 and openmpi/4.1.1 $...

download pretrained models in a local disk storage?

11

**Additional context** Hello ESM support team: Our HPC cluster does not have internet access due to firewall restriction. For example, the following code : model, alphabet = torch.hub.load("facebookresearch/esm:main", "esm2_t33_650M_UR50D") reaches...

Dear author @gavinha I have two questions: 1. Section : Scripts and Executables, where to find ichorCNA.R? ichorCNA.R (ichorCNA tool for normalizing and correcting read coverage) 2. TitanCNA/scripts/snakemake/code/countPysam.py does not...

Hello deSALT team: Follow the installation note, the command git clone hit an error, please advise. Thank you! $ git clone --recursive https://github.com/ydLiu-HIT/deSALT.git Cloning into 'deSALT'... remote: Enumerating objects: 1109,...

Bioconductor install esATAC stuck

1

Hello esATAC team, I tried to install esATAC followed by https://www.bioconductor.org/packages/release/bioc/html/esATAC.html. I use Bioconductor version 3.16 (BiocManager 1.30.18), R 4.2.1 (2022-06-23), use the commands R >library(BiocManager) >BiocManager::install("esATAC") it successfully installed...