Ryan David Ward

File exists, but getting query error: no such table:

2

The first query works: ``` `$ q -H -d"," "SELECT * FROM JGI_strains.csv WHERE Platform='Illumina'" 1,Hernandeziana,sp.,ATA11-4-KO1,Illumina 2,Aetokthonos,hydrillicola,B3-Florida,Illumina 3,Aphanocapsa,lilacina,HA4352-LM1,Illumina 4,Aphanocapsa,sp.,GSE-SYN-MK-11-07L,Illumina 5,Aphanothece,saxicola,GSE-SYN-MK-01-06B,Illumina 6,Aphanothece,sp.,CMT-3BRIN-NPC111,Illumina 7,Brasilonema,angustatum,HA4187-MV1,Illumina ... ` ``` But if I try an...

When downloading Bowtie from Conda, the recipe that requires Tbb no longer works -- since newer version of Tbb result in messages such as those found here: https://github.com/TaliaferroLab/LABRAT/issues/3 https://www.biostars.org/p/494922/ For...

[Feature Request] Ability to Evaluate Answers as Correct or Incorrect from Python Modules

4

I'm using Vanna in my Python application, and I've found that there's currently no way to evaluate the correctness of the AI's answers directly from the Python modules. This makes...

-G does not behave as expected, i.e. as -g for R2.

3

It doesn't seem that switching -g to -G, and also switching the order of the reads results in the same results. ```bash ❯ cutadapt \ --action=none \ -G ^file:adapter_file.fasta \...

pipenv shell produces excessive notifications

2

### Is your feature request related to a problem? Please describe. Activating `pipenv shell` writes 3 lines of output whenever you activate it, and mysteriously, quiet does nothing. ``` ❯...

I work mainly with bacterial chromosomes, which are circular. Presently, bedtools fail whenever a feature spans the origin, i.e. crosses from the end of the genome through zero and beyond....

Feature Request: Reduce Boilerplate to Silence Many-to-Many Join Warnings in dplyr

4

**Brief description of the problem:** Conducting exploratory (_i.e._ not production-environment) data analysis often requires multiple many-to-many joins. `dplyr`'s current behavior emits warnings for each join when not explicitly specifying `relationship...

This fixes the error where R complains about using deprecated array recycling. It also speeds up the calculation speed from ~2-3 minutes to a few seconds on a relatively small...

Hi, I'm trying to work with S3D files from EverQuest on a Linux system. I see that EQ-Zip is designed as a Windows executable. My goal is to batch extract...

Visual Studio Code Insiders Crashes on Clicking Ribbon Menu in Version 1.95.0

21

Type: Bug - **VS Code Version**: 1.95.0_insider+1728048601-1 - **OS Version**: Arch Linux ### Steps to Reproduce: 1. Open Visual Studio Code Insiders. 2. Click on the ribbon at the top...