Ryan Neff

Socket parallelization + resizing the terminal window = crash

3

Submitting 55 jobs in 55 chunks using cluster functions 'Socket' ... Submitting [============>--------------------------------------] 25% eta: 47m Error in unserialize(socklist[[n]]) : 'connection' must be a connection

This can happen if the HPC scheduler kills the jobs before logs can be written, or if the HPC scheduler does not report the job as in the system when...

Implement labels for cards to add finer granularity to interface

2

Excellent app Ted. I definitely need something like this and will likely use it! Not sure if this was meant to natively only display Anki decks, but it would be...

BLASR adds " RQ=" to read name when unmapped

4

From BamUtils, I am seeing many INVALID_QNAMEs for unmapped reads (example below): > Number of records read = 534176 > Number of valid records = 508031 > > Error Counts:...

Segmentation fault when loading large npy files (30GB input)

15

Hi there! I tried loading in the npy file from the [Skymap dataset](http://jupyterhub.hannahcarterlab.org/hub/oauth_login?next=) (Hannah Carter Lab, see link, in the efs/rnaseq_merged/ folder), but it fails to load. The file is...