Ruslan Forostianov

Authentication statement is too old to be used

3

I am working on integrating cbioportal with Azure Active Directory using SAML. I run into the below error when I visit cbioportal after 2 hours after the login. System log...

civic.url is ignored

3

There is `civic.url` property to set CIVIC url. It's documented here. https://github.com/cBioPortal/cbioportal/blob/master/docs/portal.properties-Reference.md#civic-integration It seems to be ignored by the frontend atm. Check https://github.com/cBioPortal/cbioportal-frontend/blob/master/packages/cbioportal-utils/src/civic/CivicDataFetcher.ts

`/annotation/genomic` returns variant annotations with empty colocated variants

4

I've found the bug while using the `genome-nexus-annotation-pipeline`. I've noticed that `dbSNP_RS` column of maf file were not populated consistently. Sometimes I would get this column blank, while most of...

The hotspots endpoint (`/cancer_hotspots/genomic`) fetches data with `vep.url` url. How to make the hotspots take advantage of the running local VEP service (https://github.com/genome-nexus/genome-nexus-vep)? `gn_vep.region.url` seems to be ignored by the...