Ruslan Forostianov

I've found how to set `forceAuthN` to `true` in `WebSSOProfileOptions` to force the IdP to reissue the token. https://stackoverflow.com/questions/30528636/idp-initiated-saml-login-error-authentication-statement-is-too-old-to-be-used#comment58657902_30543585 Is it a way to go? Has anybody had experience with...

Here is a PR to fix this https://github.com/cBioPortal/cbioportal/pull/9536

@alisman Yes, we are using local civic instance to prevent a potential leakage of sensitive data. We achieve that by replacing the civic public url with our custom url in...

@inodb Is it matter of removing `seedDB/`? Or there are files that has to be updated and moved over to the new folder? Don't forget to update/remove places like these...

Whether you get colocated variants in the result or not depends on the following condition https://github.com/genome-nexus/genome-nexus/blob/6841e5c49f89f1f8b399b524fb10be6d31cbbf97/service/src/main/java/org/cbioportal/genome_nexus/service/cached/BaseCachedExternalResourceFetcher.java#L85 If the variant is found in the mongo db - you get it with...

@inodb @onursumer Here is a PR to fix the issue https://github.com/genome-nexus/genome-nexus/pull/647. Can you please review?

Given [the current VEP output](https://www.ensembl.org/info/docs/tools/vep/vep_formats.html#json), it does not seem like the rest of the fields of `ColocatedVariant` (like `gnomad_nfe_maf`, `gnomad_nfe_allele`) get ever populated. Fields with similar names could be found...

We might consider to parse `VariantAnnotation` from the VEP output and save the bean to the mongodb cache. At the moment, we save the raw VEP output including fields we...

@acoffman We're getting close to working version here https://github.com/ruslan-forostianov/civic-server/tree/dockerize We are getting a different behaviour with the public civic server while testing though. The below link gives 414 Request-URI Too...

@acoffman Thanks! Please review PR https://github.com/griffithlab/civic-server/pull/704