Artem Kushner

I found that the old version does not compile given the (new)call signature for `Arbiter::spawn`.

Keep hitting memory limits on large training set with samples > 1MB. What's the strategy?

5

Opening an issue because I have exhausted the docs and am still not sure how to go about this. ## Context I'm trying to train a dictionary on a relatively...

### Checklist - [X] I have searched for [similar issues](https://github.com/isl-org/Open3D/issues). - [X] For Python issues, I have tested with the [latest development wheel](https://www.open3d.org/docs/latest/getting_started.html#development-version-pip). - [X] I have checked the [release...

MSA format as 'fasta' string

4

Am i blind or is there no method to output MSA as a fasta-formatted string? If there is a method on the class, it is not obvious. Had to resort...

Need help producing a `PSO.Molecule.Structure` (confused by `...state.data.select`) to initiate Volume Streaming.

2

I'm following the [`proteopedia-wrapper`](https://github.com/molstar/molstar/blob/6edbae80db340134341631f669eec86543a0f1a8/src/examples/proteopedia-wrapper/index.ts#L322-L331) example and my goal is having the following control over the volume streaming utility: 1. streaming a density map for the currently uploaded structure 2. streaming...

Where did profile-profile alignment go in v5?

3

There is still ample documentation on `profile-profile` alignment from v3.8, but searching the source code for v5 im not finding any references to it.. Has that been obsoleted or replaced...

How does one convert an object `ref` into a `Loci` selection?

3

I'm trying to do something really basic: trigger a selection of a whole structure. I can't figure a way to either construct an `MS` query or convert a `Ref` to...

Wondering if `superpose` should be able to handle chains longer than 100-200 residues?

8

```typescript export function dynamicSuperimpose(ctx: PluginContext,pivot_auth_asym_id: string ) { return ctx.dataTransaction(async () => { const pivot = MS.struct.filter.first([ MS.struct.generator.atomGroups({ 'chain-test': MS.core.rel.eq([MS.struct.atomProperty.macromolecular.auth_asym_id(), pivot_auth_asym_id]) }) ]); const query = compile(pivot); const structureRefs =...

I saw a thread somewhere (lost it, sorry) with grumpy tofu maybe mentioning that somehow codegen doesn't ingest env vars for codegen yet. Yearning to hear that i'm wrong, but...

I unfortunately get this "translation" annotation at the bottom of the sequence, which i don't see how i would ve enabled. It's pretty annoying because i can't select ranges of...