Deepbinner
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rrwick
a signal-level demultiplexer for Oxford Nanopore reads
I'd like to try Deepbinner with RNA reads. Does training your own model work when using RNA data?
Hey @rrwick , I just tried running the tests and some of them failed. The version of python I was running on is 3.5.2 I ran tests with `python3 -m...
Hello, after installing Deepbinner: ....... usr@pandora:/test/Deepbinner/models$ deepbinner classify -s SQK-RBK004_read_starts input Using TensorFlow backend. Loading SQK-RBK004_read_starts... done Error: input is neither a file nor a directory ....... Another try: usr@pandora:/albacore/gridion/basecalled/01010102/GA10000$...
For --reads, can I point to the fastq directory output by the minKNOW program? I have multiple fastq files output from basecalling by minKNOW, and I get an error saying...
Hi, to obtain demultiplexed reads agreed by Deepbinner and Albacore, you suggest to run Deepbinner first and then Albacore. If I do not want to mess up the folders because...
Hello, I used deepbinner realtime to classify my raw reads (not in real time, but from a directory). Has anyone faced this error: Error: no files were successfully moved to...
Dear Ryan, thanks a lot for all your very useful tools for Nanopore data handling. I'm currently trying to demultiplex a MinION run (FLO-MIN106) barcoded with SQK-RLB001 - Rapid Low...
Dear developer I'm using a ubuntu VM with all the correct requirements after following the normal installation protocol and got this error. Please can you suggest how to solve this...
Hello, Does Deepbinner recognize chimeric reads and is it able to split them or put them aside? If not, do you plan to implement such feature? Because according to Xu...
the `keras.load_model` function requires a string and this function returns a Path object. I've altered it to return a string, which is what downstream functions seem to expect anyway. This...
