Bob Policastro

Figured out what the problem was. It was loading the R libraries first from my system R, instead of the app.

I don't really use the system installation of R on my windows machine, so I just uninstalled it for the time being. Obviously not a real solution to the problem,...

Windows 10 Education

Is there a v1.2 release yet for the desktop apps? I only see v1.1 on the github releases. I do actually use cerebroApp and it's worked well for me! I...

If I'm [reading the code](https://github.com/romanhaa/cerebroPrepare/blob/32c96ecd30b2d6d87aee478d816e0efb1749e6d0/R/exportFromSeurat.R#L322) correctly, it looks like for Seurat v3 you are grabbing the 'log normalized' expression values from `@assays$RNA@data`. These values are actually the raw expression values...

Thanks for the temporary fix, that should help for now. In case you were curious, here is the structure of my seurat object, after following their sctransform and data integration...

I pulled the latest version from github and redownloaded the checkpoint file. I ended up getting the same error as previous, but the temporary fix here https://github.com/microsoft/BioGPT/issues/17#issuecomment-1412000366 still resolved the...

The comparison is $`log_{2}(\text{Sample 2}) - log_{2}(\text{Sample 1})`$. Bob